PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093919.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25820.6 Da    PI: 9.9639
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+
  XP_027093919.1  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 58
                    79***********************************************8 PP
2K-box1072.2e-35791736100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL++keL+qLe++Le+++++iRskK+e++l+++++lqk+e +l++en +Lr+k++e
  XP_027093919.1  79 SCSTQEINAQFYQQESKKLRQQIQMIQNSNRHLMGEGLSSLNVKELKQLENRLERGISRIRSKKHEMILAETDTLQKREIQLEQENACLRAKIAE 173
                     33478999************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRVYEYANN  60
NIKSTIDRYR KATTDASNSC STQEINAQFY QQESKKLRQQ IQMIQNSNRH LMGEGLSSLN  120
VKELKQLENR LERGISRIRS KKHEMILAET DTLQKREIQL EQENACLRAK IAENERLQQL  180
SIVPPGQEYN EMQAYLARNL LQLNMMEGLP VFQVPDKKSL QLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-104MIKC_MADS family protein