PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093913.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27051.1 Da PI: 9.9494

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.3	3.2e-31	14	63	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+ XP_027093913.1 14 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 63 79***********************************************8 PP
2	K-box	106.8	2.5e-35	85	179	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL++keL+qLe++Le+++++iRskK+e++l+++++lqk+e +l++en +Lr+k++e XP_027093913.1 85 SCSTQEINAQFYQQESKKLRQQIQMIQNSNRHLMGEGLSSLNVKELKQLENRLERGISRIRSKKHEMILAETDTLQKREIQLEQENACLRAKIAE 179 33478999************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
METRKMGRGK IEIKRIENNT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRVY 60 EYANNNSIKS TIDRYRKATT DASNSCSTQE INAQFYQQES KKLRQQIQMI QNSNRHLMGE 120 GLSSLNVKEL KQLENRLERG ISRIRSKKHE MILAETDTLQ KREIQLEQEN ACLRAKIAEN 180 ERLQQLSIVP PGQEYNEMQA YLARNLLQLN MMEGLPVFQV PDKKSLQLGL DLVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-102	MIKC_MADS family protein