PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027093864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 685aa MW: 78176.9 Da PI: 6.7508 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 245.3 | 2.4e-75 | 310 | 678 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetsekn....sseelaalklfsevsPilkf 93 lL ++Ae v++++ +a++lL as++g+p+qR++ +f+eAL++++ +++ + l + ++ + ++ a+ + ++ +P+ f XP_027093864.1 310 LLQAAAEKVANQQYVQARKLLILCGCFASKSGSPVQRVVYCFAEALEKKIEQEWGIApTEELVGKLRKPLDemlaQVYMQPAMMTSQQETPFTLF 404 678899*********************************************9764321222322222222222223444445566999******* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 + +ta + Il+av++++rvH iDf+i++G++W ++qaLa R e p +l+i +vg sk+ +eetg+ L++fAe+l++pf++++ v+++l+ XP_027093864.1 405 TEFTATESILNAVASAKRVHLIDFQINNGAHWTLIMQALAVRYECPFeHLKISAVGT----SKKIMEETGKWLSSFAETLNLPFSYKM-VVSDLK 494 ******************************************966545*********....9**************************.7999** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 dl+ + ++++ +E la+ + ++l + l +++ ++++ ++++l+P++vvv e ea++n+++F erf al +sa+fd++++ + ++ r XP_027093864.1 495 DLRENYFELEFDEELAIYSDMRLWTQL----VWPNHLKALMGVIRKLKPRIVVVKEFEANTNAPNFPERFDAALLLFSAMFDCINSCMDHHVLYR 585 *********************999998....45555667*************************************************9999*** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ E++++ r ++n++ +eg er++rhe+ + Wr+ + e+G+ + l+ + ++a+l lr + +v+ + ++l++gWk+ p s+SaW+ XP_027093864.1 586 KMTEEVIFPRMVQNIIVAEGMERFQRHEKIGFWRKLFAEFGMAETDLTRSSLCEASLFLRSSErLSSCTVDMDGKCLIMGWKGAPFQSLSAWK 678 ***************************************************************9888*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence |
MDTSPANYAN SVPHISYLAE GKKESPFLPL TSLEFLKQHG TKLKRLREGN LNELSSDTLM 60 DTPDHPAQST ASPMKVAKVQ LRKFNSQKID VLSYVASRIG TMVQSRGRGR SRGLERSTSV 120 SAYPSRFRSE GDYFELEFDE ELAIFLALRL WTQQFEQRNL LQEGSFRALN RWLTEQIYIS 180 QSLFFTILSE KIKDTDTTLD ENSVPQIYYL DEGKKESPFL PLTSLEFLKQ HGTKLKRLRE 240 GNLNELSSDT PMDTSHHPAL STASLMKAAK AQLFKFNSQK IDVFCYVSSH IGTLSGLRSE 300 VPGDLELALL LQAAAEKVAN QQYVQARKLL ILCGCFASKS GSPVQRVVYC FAEALEKKIE 360 QEWGIAPTEE LVGKLRKPLD EMLAQVYMQP AMMTSQQETP FTLFTEFTAT ESILNAVASA 420 KRVHLIDFQI NNGAHWTLIM QALAVRYECP FEHLKISAVG TSKKIMEETG KWLSSFAETL 480 NLPFSYKMVV SDLKDLRENY FELEFDEELA IYSDMRLWTQ LVWPNHLKAL MGVIRKLKPR 540 IVVVKEFEAN TNAPNFPERF DAALLLFSAM FDCINSCMDH HVLYRKMTEE VIFPRMVQNI 600 IVAEGMERFQ RHEKIGFWRK LFAEFGMAET DLTRSSLCEA SLFLRSSERL SSCTVDMDGK 660 CLIMGWKGAP FQSLSAWKLQ NEYEI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-44 | GRAS family protein |