PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027093863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 53799.5 Da PI: 6.842 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 221.1 | 5.4e-68 | 118 | 472 | 4 | 360 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv..selykal.ppsetsekn..sseelaalklfsevsPilkf 93 lL ++Ae v++++ +a++lL as++g+p+qR++ +f+eAL++++ +++ + + + + ++ ++ ++ a+ + ++ P+ f XP_027093863.1 118 LLQAAAEKVANQQYVQARKLLILCGCFASKRGSPVQRVVYCFAEALEKKIEQEWgiAPTEELIgKLRKPLDEMlaQVYMQPAMMTSQQEKPFTLF 212 678899*********************************************97622223333322222222222244444455669999****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 + +ta + Il+av++++rvH iDf+i++G++W ++qaLa R e p +l+i +vg sk+ +eetg+ L++fAe+l++pf++++ v+++l+ XP_027093863.1 213 TEFTATESILNAVASAKRVHLIDFQINNGAHWTLIMQALAVRYECPFeHLKISAVGT----SKKIMEETGKWLSSFAETLNLPFSYKM-VVSDLK 302 ******************************************966545*********....9**************************.7999** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 dl+ + ++++ +E la+ + ++l + l +++ ++++ ++++l+P++vvv e ea++n+++F erf al +sa+fd++++ + ++ r XP_027093863.1 303 DLRENYFELEFDEELAIYSDMRLWTQL----VWPNHLKALMGVIRKLKPRIVVVKEFEANTNASNFPERFDAALLLFSAMFDCINSCMDHHVLYR 393 *********************999998....45555667*************************************************9999*** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360 ++ E++++ r ++n++ +eg er++r+e+ + Wr+ + e+G+ + l+ + ++a+l lr + +v+ + ++l++ XP_027093863.1 394 KMTEEVIFPRMVQNIIVAEGMERFQRQEKIGFWRKLFAEFGMVETDLTRSSLCEASLFLRSSErLSSCTVDMDGKCLIM 472 ************************************************************9997777888888888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence |
MDTSPANYAN SVPHISYLAE GKKESPFLPL TSLEFLKQHG TKLKRLREGN LNELSSDTLM 60 DTPDHPALST ARLMKVAKVQ LLKFNSQKID VLSYVASRIG TQSGLHSEVP GDLELALLLQ 120 AAAEKVANQQ YVQARKLLIL CGCFASKRGS PVQRVVYCFA EALEKKIEQE WGIAPTEELI 180 GKLRKPLDEM LAQVYMQPAM MTSQQEKPFT LFTEFTATES ILNAVASAKR VHLIDFQINN 240 GAHWTLIMQA LAVRYECPFE HLKISAVGTS KKIMEETGKW LSSFAETLNL PFSYKMVVSD 300 LKDLRENYFE LEFDEELAIY SDMRLWTQLV WPNHLKALMG VIRKLKPRIV VVKEFEANTN 360 ASNFPERFDA ALLLFSAMFD CINSCMDHHV LYRKMTEEVI FPRMVQNIIV AEGMERFQRQ 420 EKIGFWRKLF AEFGMVETDL TRSSLCEASL FLRSSERLSS CTVDMDGKCL IMG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 8e-39 | GRAS family protein |