PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093435.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 353aa MW: 39095.8 Da PI: 6.008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	137	188	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+++P++ + ++ + a+i A++++k+L+ XP_027093435.1 137 QRMTHIAVERNRRKQMNDYLAVIRSMMPPS---YVQRGDQASIIGGAINFVKELE 188 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MALDAAIHMQ DSFGYFFKEF YTSGGGGGGG GANGGWGYGY GFGLQEEKGF VEMLDSGMDH 60 NLHGNWESSS SSVVMQNVKE YWDPNSSPEA CTADQLLLEG GSPTMEEPPE SAPTPAAGKR 120 KRRRTRTCKN KEELENQRMT HIAVERNRRK QMNDYLAVIR SMMPPSYVQR GDQASIIGGA 180 INFVKELEQH LQTLEAQRRR NSQQEQENGM SPPLFADFFT FPQYSTRSSS TTLHSNTINS 240 PVTTTTSDHQ PQPSRAATDQ SPSALADIEV TMAESHANLK ILSKRRPRQL LKLVAGLQLL 300 WLTILHLNVT TTLDQKVLYS ISVKLEEGCQ LTTIDEIADA VNHLLGRIEE GAV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MALDAAIHMQ DSFGYFFKEF YTSGGGGGGG GANGGWGYGY GFGLQEEKGF VEMLDSGMDH  60
NLHGNWESSS SSVVMQNVKE YWDPNSSPEA CTADQLLLEG GSPTMEEPPE SAPTPAAGKR  120
KRRRTRTCKN KEELENQRMT HIAVERNRRK QMNDYLAVIR SMMPPSYVQR GDQASIIGGA  180
INFVKELEQH LQTLEAQRRR NSQQEQENGM SPPLFADFFT FPQYSTRSSS TTLHSNTINS  240
PVTTTTSDHQ PQPSRAATDQ SPSALADIEV TMAESHANLK ILSKRRPRQL LKLVAGLQLL  300
WLTILHLNVT TTLDQKVLYS ISVKLEEGCQ LTTIDEIADA VNHLLGRIEE GAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	124	KRKRRR
2	120	124	RKRRR
3	120	125	RKRRRT
4	138	149	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-71	bHLH family protein