PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093162.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 302aa MW: 34070.9 Da PI: 6.0617

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5e-12	127	173	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L +l+P + kKl+K ++Le A+++I +Lq XP_027093162.1 127 YHVAAERKRREKLSDLFIALSKLVPGL-----KKLDKTSVLEDATKHIEELQ 173 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MDMAGFNNQY IINSWPDEQV DDGFFGIKPF LSEVFPAIPY CNSESIPIQM PQTCMKQKFK 60 QLNDTNLSPS HPTVESSQKG SSPFSTTQFI SFGKSSPYSS DGEKLYEDDI VYNSRSPIRR 120 TPIQAQYHVA AERKRREKLS DLFIALSKLV PGLKKLDKTS VLEDATKHIE ELQERLKTLE 180 EGEKNNSTAP NTMVERCIIS TCSDNTSSFK GTTLEQIPEI KVKIQGKSVL IKILCEKKYY 240 GSISSMSTEL EKLHLTILDT RILRFGSCTL DITLKAQMDS AFSVTVEDII EHLQLGIFQL 300 QS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	137	ERKRRE
2	133	138	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-42	bHLH family protein