PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027092987.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 286aa    MW: 31333.9 Da    PI: 8.4072
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027092987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.8e-3183137358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++rY+eClkNhAas+Gg+++DGCgEfmps geegt +a+kCaAC CHRnFHR+e++
  XP_027092987.1  83 STRYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEAFKCAACHCHRNFHRKESS 137
                     689*************************9.999********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MALAGEDKEM RIPSGSLGYD PLENLEHSTA THHNHHIQHP EDQLIHQEKS SRGPGATAAA  60
LSSGGSKSKT PTPTAGRSHS TSSTRYRECL KNHAASIGGN VTDGCGEFMP SGEEGTLEAF  120
KCAACHCHRN FHRKESSGDG AIVVHQLPLP PPLPSPSMNQ HRGESMNVHA NHWTTMVQPV  180
KMAFGGGSAS AATDSSSEEL NFNAYQSTSV PPPPQFVLAK KRFRTKFSQE QKDKMLAFAE  240
KLGWRIPRED DTEVQRFCSE VGVKRQVFKV WMHNNKNSAK KNPQES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.13e-57ZF-HD family protein