PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092834.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 559aa MW: 60431.3 Da PI: 6.5142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	371	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027092834.1 371 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 418 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MDKEYFLNAA GTQLPLQFEA WNSFSPAPEL NCSSGEASNC CLNPNWDKPA DHYARHGSAL 60 SSVVSSAMAP NSSVPVEALA FRELIKKLGP VCSSGDLPQP FPPGAASYAS CNTSCYSTMP 120 LSSPPKLQAP VLNENFSNLR NSVAPNPPLP ALSADPGFAE RAAKFSCFGS RSFNGRTSQF 180 GVHNNAELPY GSSTPTVANG KLPRASSSPL LKRGGSPPLE NNNLGQSQME TRPIDGLIPS 240 SDNTVNKVPL AAANSNEESS VSEQVPSGET GLKTPNESNP RKRKAVARGK AKEDGSSQAA 300 NHNKGAEADI DSNAKRSKMT EATASDDQGV KIEERKGSDN KTGDDKANQR PPEPPKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 420 VEFLSMKLAS VNPRLDNMDN ILSKDLYQPN ASLPPPLFPM DTSEPALYKN PSQQNQELQS 480 NNGSVDQIDT TALCRNLGLQ LPHLDGFTEG LSQFPGFCED DLHSIVRMGY SHNPDTDAAL 540 FHSQTFPVAN QTSRMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MDKEYFLNAA GTQLPLQFEA WNSFSPAPEL NCSSGEASNC CLNPNWDKPA DHYARHGSAL  60
SSVVSSAMAP NSSVPVEALA FRELIKKLGP VCSSGDLPQP FPPGAASYAS CNTSCYSTMP  120
LSSPPKLQAP VLNENFSNLR NSVAPNPPLP ALSADPGFAE RAAKFSCFGS RSFNGRTSQF  180
GVHNNAELPY GSSTPTVANG KLPRASSSPL LKRGGSPPLE NNNLGQSQME TRPIDGLIPS  240
SDNTVNKVPL AAANSNEESS VSEQVPSGET GLKTPNESNP RKRKAVARGK AKEDGSSQAA  300
NHNKGAEADI DSNAKRSKMT EATASDDQGV KIEERKGSDN KTGDDKANQR PPEPPKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  420
VEFLSMKLAS VNPRLDNMDN ILSKDLYQPN ASLPPPLFPM DTSEPALYKN PSQQNQELQS  480
NNGSVDQIDT TALCRNLGLQ LPHLDGFTEG LSQFPGFCED DLHSIVRMGY SHNPDTDAAL  540
FHSQTFPVAN QTSRMKIEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-88	bHLH family protein