PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027092620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 29687.1 Da PI: 6.7792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.2e-13 | 216 | 261 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq XP_027092620.1 216 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 261 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MQPAGGGGVG LSRGLGGGGG GGGGGGGGGL ARFRSAPATW LEALLENDDD NDVVLDPPVL 60 ASSSNKPPLH PPASSPVQST QQQQSSAASS RYAADLGMLD TVGSGGGGLS GLLRQNSSPA 120 ELLSDGYFSN FGIPANYDNF LMSSLDVSSE SPSKRPREAD SNNPSPKASS QVKGEQSEQL 180 HAGMGRLLDS EMEKLSEDAV LCRVRAKRGC ATHPRSIAER VRRTRISDRI RKLQELVPNM 240 DKQTNTADML EEAVEYVKFL QKQIQELKEQ QKKCKCFAKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 6e-49 | bHLH family protein |