PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027092619.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 304aa    MW: 32638.7 Da    PI: 8.4576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027092619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13216261655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_027092619.1 216 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 261
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MQPAGGGGVG LSRGLGGGGG GGGGGGGGGL ARFRSAPATW LEALLENDDD NDVVLDPPVL  60
ASSSNKPPLH PPASSPVQST QQQQSSAASS RYAADLGMLD TVGSGGGGLS GLLRQNSSPA  120
ELLSDGYFSN FGIPANYDNF LMSSLDVSSE SPSKRPREAD SNNPSPKASS QVKGEQSEQL  180
HAGMGRLLDS EMEKLSEDAV LCRVRAKRGC ATHPRSIAER VRRTRISDRI RKLQELVPNM  240
DKQTNTADML EEAVEYVKFL QKQIQVMEAL VYKFEKFLTK RLDRRVLGCN NNKFRYHLLS  300
PFML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-52bHLH family protein