PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092511.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 535aa MW: 60091.7 Da PI: 7.6448

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	342	385	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+riN+++ +Lr+l+P+ + K++Ka++L A +YI++Lq XP_027092511.1 342 ITERNRRHRINHGLLTLRSLVPNiS------KMDKASTLADAYDYIQELQ 385 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MLQQQKGTKS SSSSCSSKTI RGTSQQGQAP DRYKEVFERF KDMAALDQAL ERLRVLVKNN 60 VWDYCIVWKL GDDPSSFIEW RGCCCSGGNW LENVKEESGK DQYLFAQCRD GHFKHPIRTK 120 ACEKLAKFPL SIPLYSGIHG EVVMSNQARW HVNSNNTSSD EAIGTQVLVP VAGGLIELFS 180 TNLVQENQQI IDFILAQYVP VELETMASHR RTQLNAAEPP HKPFLDDCFN NLPASVCHMI 240 PVPNLQYPTF IPNSSNHPSF EGSSISSDLP KDYQLLNVCS GSASCSTSPE KSSGRHPGNL 300 DSRRMKDPSC GFGSAKWAAE TNENLRGRNK TERDNYHSKN LITERNRRHR INHGLLTLRS 360 LVPNISKMDK ASTLADAYDY IQELQKSVEE YQGKLRDLAE QEANMYSSEQ EVPKPCREIQ 420 RTDYQPTIEQ GDSRRHSSTN DKKQGKVKIE VSQIGTRDFL VKIICTQKRG GFLRLMQAMD 480 SFGLQVTDAN VTTSNGLVLN VLKAEAFSEE IQPTTLKNSL MELFLQDGQG KIQLA

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MLQQQKGTKS SSSSCSSKTI RGTSQQGQAP DRYKEVFERF KDMAALDQAL ERLRVLVKNN  60
VWDYCIVWKL GDDPSSFIEW RGCCCSGGNW LENVKEESGK DQYLFAQCRD GHFKHPIRTK  120
ACEKLAKFPL SIPLYSGIHG EVVMSNQARW HVNSNNTSSD EAIGTQVLVP VAGGLIELFS  180
TNLVQENQQI IDFILAQYVP VELETMASHR RTQLNAAEPP HKPFLDDCFN NLPASVCHMI  240
PVPNLQYPTF IPNSSNHPSF EGSSISSDLP KDYQLLNVCS GSASCSTSPE KSSGRHPGNL  300
DSRRMKDPSC GFGSAKWAAE TNENLRGRNK TERDNYHSKN LITERNRRHR INHGLLTLRS  360
LVPNISKMDK ASTLADAYDY IQELQKSVEE YQGKLRDLAE QEANMYSSEQ EVPKPCREIQ  420
RTDYQPTIEQ GDSRRHSSTN DKKQGKVKIE VSQIGTRDFL VKIICTQKRG GFLRLMQAMD  480
SFGLQVTDAN VTTSNGLVLN VLKAEAFSEE IQPTTLKNSL MELFLQDGQG KIQLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	2e-43	bHLH family protein