PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092449.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 362aa MW: 39555.6 Da PI: 10.0187

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.2e-31	290	347	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ XP_027092449.1 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGEHNHS 347 99**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MAVELMTGFR NDTFASKMEE NAVQEAATAG LQSVEKLIRL LSQSQSQPSQ IYQDPSSKQS 60 SDYQAVADAA VNKFKKFISL LDRTRTGHAR FRRGPVTNPP QPAPPLPPTQ QPEQPQPQRQ 120 PPQSNPAATS QPANNLFQED DKEKVKSSSR IYCPTPIQGL PPLPHNHHQL MKNVNIERKE 180 STTTINFAAA SPVNSFMSSL TGDTESLQPS MSSGFQITNL SSHVSSAGKP PLSTSSLKRK 240 CSSMDDSAVK CGGAASSGGR CHCPKKRKSR VKRVVRVPAI SMKMADIPPD DYSWRKYGQK 300 PIKGSPHPRG YYKCSSLRGC PARKHVERAL DDPTMLIVTY EGEHNHSHSA TEAPGALVLE 360 SS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MAVELMTGFR NDTFASKMEE NAVQEAATAG LQSVEKLIRL LSQSQSQPSQ IYQDPSSKQS  60
SDYQAVADAA VNKFKKFISL LDRTRTGHAR FRRGPVTNPP QPAPPLPPTQ QPEQPQPQRQ  120
PPQSNPAATS QPANNLFQED DKEKVKSSSR IYCPTPIQGL PPLPHNHHQL MKNVNIERKE  180
STTTINFAAA SPVNSFMSSL TGDTESLQPS MSSGFQITNL SSHVSSAGKP PLSTSSLKRK  240
CSSMDDSAVK CGGAASSGGR CHCPKKRKSR VKRVVRVPAI SMKMADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSLRGC PARKHVERAL DDPTMLIVTY EGEHNHSHSA TEAPGALVLE  360
SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	6e-89	WRKY family protein