PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027092396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 451aa MW: 51682 Da PI: 5.4663 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 163 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H XP_027092396.1 163 YICSVCGRKCKTHLDLKKHFRQlH 186 89*****************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence |
MINSLCTSIE FIHLNSPPFS HYRFPKPLFL IPQFAPQIPP KPLSLSDPNS SGKWANIRAC 60 AAEAAAESEI DMVRTKEGIY TAKPKKVVVL WDLDNKPPRG PPYQAAMALK KVAQHFGDLV 120 DISAYANRHA FVHLPQWVVE ERRERRRMDI LERKGVSTPS EPYICSVCGR KCKTHLDLKK 180 HFRQLHERER QKKLNRMRSL KGKKRQRFKE RFVDGNEKYN EAARTLTSPQ VGYGLASELR 240 RAGVFVKTVE DKPQAADWAL KRQMQHSMSR GIDWLLLVSD DSDFSEMLRR ARAANLGTVV 300 IGDGYRALGR QADLWVPWND VENGEIKEDD LVSQIKRRRE SGGRRTGRFS VSEFEGGLNG 360 EGSVDSLMDQ LVGTTGFDGM RISAFSEGEE EEDEDREEEQ DWLRENQRGY VQIGLKNSID 420 DEDDPDEYTE EEDYVLDSEE EGVEEDGLQF W |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-148 | C2H2 family protein |