PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092393.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 451aa MW: 51682 Da PI: 5.4663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	163	186	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H XP_027092393.1 163 YICSVCGRKCKTHLDLKKHFRQlH 186 89*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MINSLCTSIE FIHLNSPPFS HYRFPKPLFL IPQFAPQIPP KPLSLSDPNS SGKWANIRAC 60 AAEAAAESEI DMVRTKEGIY TAKPKKVVVL WDLDNKPPRG PPYQAAMALK KVAQHFGDLV 120 DISAYANRHA FVHLPQWVVE ERRERRRMDI LERKGVSTPS EPYICSVCGR KCKTHLDLKK 180 HFRQLHERER QKKLNRMRSL KGKKRQRFKE RFVDGNEKYN EAARTLTSPQ VGYGLASELR 240 RAGVFVKTVE DKPQAADWAL KRQMQHSMSR GIDWLLLVSD DSDFSEMLRR ARAANLGTVV 300 IGDGYRALGR QADLWVPWND VENGEIKEDD LVSQIKRRRE SGGRRTGRFS VSEFEGGLNG 360 EGSVDSLMDQ LVGTTGFDGM RISAFSEGEE EEDEDREEEQ DWLRENQRGY VQIGLKNSID 420 DEDDPDEYTE EEDYVLDSEE EGVEEDGLQF W

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MINSLCTSIE FIHLNSPPFS HYRFPKPLFL IPQFAPQIPP KPLSLSDPNS SGKWANIRAC  60
AAEAAAESEI DMVRTKEGIY TAKPKKVVVL WDLDNKPPRG PPYQAAMALK KVAQHFGDLV  120
DISAYANRHA FVHLPQWVVE ERRERRRMDI LERKGVSTPS EPYICSVCGR KCKTHLDLKK  180
HFRQLHERER QKKLNRMRSL KGKKRQRFKE RFVDGNEKYN EAARTLTSPQ VGYGLASELR  240
RAGVFVKTVE DKPQAADWAL KRQMQHSMSR GIDWLLLVSD DSDFSEMLRR ARAANLGTVV  300
IGDGYRALGR QADLWVPWND VENGEIKEDD LVSQIKRRRE SGGRRTGRFS VSEFEGGLNG  360
EGSVDSLMDQ LVGTTGFDGM RISAFSEGEE EEDEDREEEQ DWLRENQRGY VQIGLKNSID  420
DEDDPDEYTE EEDYVLDSEE EGVEEDGLQF W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-148	C2H2 family protein