PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092108.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 408aa MW: 42329.6 Da PI: 8.0279

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.3	7.8e-40	94	202	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + +++ +++a+ XP_027092108.1 94 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFSsLNVSLRSSGTT--ISAPPSKSAP 186 6899****************************************************************999777777777663..3333333334 PP TCP 97 skksqksaasalnlak 112 sa+++l +++ XP_027092108.1 187 LFLHGGSATAMLGFHH 202 4444444444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL 60 SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA 120 ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP 180 PSKSAPLFLH GGSATAMLGF HHQLGNTGFG QDPDENYMKK RFREDTTGAT SPSAAKPERA 240 GVQDHEPGSE AKTGLAQPSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG 300 GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV HQLGLGVSET 360 NMGMLASMNA YSGGGGSRVD LGMNLEQHHH QNQPQGSDSG DENPKDSQ

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL  60
SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP  180
PSKSAPLFLH GGSATAMLGF HHQLGNTGFG QDPDENYMKK RFREDTTGAT SPSAAKPERA  240
GVQDHEPGSE AKTGLAQPSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG  300
GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV HQLGLGVSET  360
NMGMLASMNA YSGGGGSRVD LGMNLEQHHH QNQPQGSDSG DENPKDSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-65	TCP family protein