PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092083.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 446aa MW: 48863.9 Da PI: 5.3282

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.8	2.9e-26	184	249	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf+kl++++e+g ++ln +a+ L +v ++RRiYDi+NVLe+++liek+ k++irwkg XP_027092083.1 184 RYDSSLGLLTKKFIKLIREAEDGCLDLNRAADLL---EV--QKRRIYDITNVLEGVGLIEKTTKSHIRWKG 249 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSTSGDGRGR DRHIDIDLNV SLNSSFGNLS LAASAVPPPP RLEPQHRFSV PVVPSSVCER 60 LDPFASIHSP PAAADPSAII NYCIAPNFLD IQPKDSFTSW NSPSLLGLPD TNEHGIFEAN 120 KGTSKTSSVH DITQAVNAAS LKLPVSLLEA KQCSKARGSN HVKPGTLEPN AEVLDNVGVV 180 GSCRYDSSLG LLTKKFIKLI REAEDGCLDL NRAADLLEVQ KRRIYDITNV LEGVGLIEKT 240 TKSHIRWKGY EMFGPEELNN QASILKAEIE RLFAEDCRLD DCIRKMDEKM NALVHAGTSQ 300 RTLYLTEEDI MSQPCFRNKT VIAVKAPHAS TLEVPDPDED IGFSERQYKL ILRSTTGPID 360 LYLLSNHGGH HEDVKVKRRK LLDSSVVNGC RQGADDAYYS DASGLQSSDV SGINKIIPSD 420 GAVNDDYWLR SDYAVTATDL WGTECS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSTSGDGRGR DRHIDIDLNV SLNSSFGNLS LAASAVPPPP RLEPQHRFSV PVVPSSVCER  60
LDPFASIHSP PAAADPSAII NYCIAPNFLD IQPKDSFTSW NSPSLLGLPD TNEHGIFEAN  120
KGTSKTSSVH DITQAVNAAS LKLPVSLLEA KQCSKARGSN HVKPGTLEPN AEVLDNVGVV  180
GSCRYDSSLG LLTKKFIKLI REAEDGCLDL NRAADLLEVQ KRRIYDITNV LEGVGLIEKT  240
TKSHIRWKGY EMFGPEELNN QASILKAEIE RLFAEDCRLD DCIRKMDEKM NALVHAGTSQ  300
RTLYLTEEDI MSQPCFRNKT VIAVKAPHAS TLEVPDPDED IGFSERQYKL ILRSTTGPID  360
LYLLSNHGGH HEDVKVKRRK LLDSSVVNGC RQGADDAYYS DASGLQSSDV SGINKIIPSD  420
GAVNDDYWLR SDYAVTATDL WGTECS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.3	4e-86	E2F/DP family protein