PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027092065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 816aa MW: 92525.4 Da PI: 9.2719 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 8e-09 | 199 | 219 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C++G++C+F H+ XP_027092065.1 199 TCRNFAT-GNCRRGSQCRFLHP 219 5******.*************9 PP | |||||||
2 | zf-CCCH | 17.9 | 5.3e-06 | 280 | 299 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+r G Ck G++C+F+H XP_027092065.1 280 CKDFMR-GKCKWGASCRFSHH 299 ******.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence |
MDERGRKRKP LWDAEDENQR ISCSGKEYYS TYDGGCSNRF SSSKADNSSS MPKDHAGWPS 60 WDTLEENTTR KKVEGVYKNE QDELEMRERV VSPGFDGWGH RKHSNSSDDS LSRSRRYLEG 120 GRNRSRDRGR NRSRSPSWSK GRDRSGVRSR TMSRSRSRSR NRNRNSARGQ TRSRSPFHGH 180 RHDLQGWNDS SGSGRSSQTC RNFATGNCRR GSQCRFLHPD RMDRDYLEND FVERSRSRPD 240 RGHALAYGEG RGRQSWDKGS DSNHQEDDSF RSKSRGTICC KDFMRGKCKW GASCRFSHHV 300 DSGDNNGKDT RIALFERDRE HRTNESRKPL CKYFLAGKCN RDNCWFSHDG PIDSNHESRP 360 RDAGGRQSLV DKNDQWKGAT WDQVEPESKA VEGSRWSETV VPNRKIADAQ LERRDNKWAH 420 ERSLRGPELK EKSDILHRPT VAEDNIVNAS SFDGLGQLKD NRNTNNPEFM PGQSLNQNVI 480 GNLSLNRPLV SNDQRDNLFF PHPSNVRNVD LNGSGQGLSS TLIIQNHTGS HQKEAAKTPE 540 IQDFGAPRSF YNNASNNQVP QNLLSPAAAS PMHKFVAEQT QTHLHAALNH LTSTALVSAL 600 ETAMQIQPNT DVRSPVQLDP LEDGRGKLGD VNQTSGEVPY SYEQKNGIPF EEFSPMSGDN 660 PQFGNTLISN ISNVQCHESP ESKQQEAPAA SEVKDNNTES VVECHKGQED LHKENGDEHV 720 KVGNGNNNKD DKDMRLFKNA LVDFVKETLK PTWKEGRMSR EVHKTIVKKV VDKVTSTMQD 780 HIPKTQGKTD QYLSHSKPKI TKLVQAYVER HLKTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 132 | RNRSRDRGRNR |
2 | 124 | 134 | RNRSRDRGRNR |
3 | 154 | 164 | RNRSRDRGRNR |
4 | 154 | 162 | RSRSRSRNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 6e-11 | C3H family protein |