PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092063.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27499.3 Da PI: 10.0656

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.1	1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly++ss XP_027092063.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSS 59 8***********************************************96 PP
2	K-box	86.4	5.7e-29	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+++R++ Ge+L+ Ls+k+Lq+Le+qLe sl+ +R +K+++l+++i+el +k +++en +L kk+ XP_027092063.1 81 NPSSEVKFWQREVAMLRQQLQNLQENHRQMRGEELSGLSVKDLQNLENQLEMSLRGVRMRKDQVLIDEIQELNRKGSLIHQENVELYKKV 170 678899*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVVIFSS TGKLYDFSSS 60 SMKSVIERYN KVKEEHHQLA NPSSEVKFWQ REVAMLRQQL QNLQENHRQM RGEELSGLSV 120 KDLQNLENQL EMSLRGVRMR KDQVLIDEIQ ELNRKGSLIH QENVELYKKV NLIREENQEL 180 YKKVYGTKEA NGTNKTALLT NNLSIREDPD GPVHLQLSQP QQNYETATGA SKLGRLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-115	MIKC_MADS family protein