PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091943.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 428aa MW: 46727 Da PI: 9.3145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	191	213	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ + H XP_027091943.1 191 ACSECGEVFPKIESLEHHQAVrH 213 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MNERGPSSLP QLRLCFAALL FMALLTSSPE PRKTPSEKTS HNNKKHPSKR RKKQQPQKPP 60 SSWDQFKNLL TCKQIEGSKV HDPSIPKLGS CSSICTFRDV VHGNTSRVVH RADNSPESSS 120 VGQETRLLSK KSSHGSSSRS FSSSLRSNGT SVTYNNGSCR GMQFRKLSGC YECHTIVDPS 180 RYPLPRTTIC ACSECGEVFP KIESLEHHQA VRHAVAELGP EDSSRNIVEI IFKSSWLKKD 240 NPICSIERIL KVQNTQRTIQ RFEDCRDAVK IRANSNSKKN PRCAADGNEL LRFHCTSLTC 300 PLGARGSSSL CGSVPGCGVC AIIRHGFQGN KSSGVRTTAS SGRAHDCLGL GTDGGRRAML 360 VCRVIAGRVK RMADDAAVEE DDAGTLAAGS YDSVAGYAGV YSNLEELYVF NPRAILPCFV 420 VIYKALES

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MNERGPSSLP QLRLCFAALL FMALLTSSPE PRKTPSEKTS HNNKKHPSKR RKKQQPQKPP  60
SSWDQFKNLL TCKQIEGSKV HDPSIPKLGS CSSICTFRDV VHGNTSRVVH RADNSPESSS  120
VGQETRLLSK KSSHGSSSRS FSSSLRSNGT SVTYNNGSCR GMQFRKLSGC YECHTIVDPS  180
RYPLPRTTIC ACSECGEVFP KIESLEHHQA VRHAVAELGP EDSSRNIVEI IFKSSWLKKD  240
NPICSIERIL KVQNTQRTIQ RFEDCRDAVK IRANSNSKKN PRCAADGNEL LRFHCTSLTC  300
PLGARGSSSL CGSVPGCGVC AIIRHGFQGN KSSGVRTTAS SGRAHDCLGL GTDGGRRAML  360
VCRVIAGRVK RMADDAAVEE DDAGTLAAGS YDSVAGYAGV YSNLEELYVF NPRAILPCFV  420
VIYKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-155	C2H2 family protein