PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091717.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 1099aa MW: 121598 Da PI: 7.4548

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	177	254	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Ce+dls+ak+yhrrhkvCe+hska+++lvs+++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ XP_027091717.1 177 MCQVDNCEEDLSHAKDYHRRHKVCEFHSKATKALVSKQMQRFCQQCSRFHPLPEFDEGKRSCRRRLAGHNRRRRKTQP 254 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence
MEEIGTHVAS PIFIRQASFA VGAGGGGSAR FCSQHPAPRK RSLPFTQQQQ HQQKPSDAWT 60 SKQWEWDSMR FIAKPHECHV PPPPPVMQHR HHARVMQEEQ ELNTAPTTSG LNNTSKSCHA 120 GEGSDHLRLK LGSDSGSGGK AGDAAGTSTS FNSTDEPVSR PNKRVRSGSP GSATYPMCQV 180 DNCEEDLSHA KDYHRRHKVC EFHSKATKAL VSKQMQRFCQ QCSRFHPLPE FDEGKRSCRR 240 RLAGHNRRRR KTQPEDAASR VLLPGSSEKG INSDLDIVNL LAVLARAQGN TEDRGSTLPD 300 KDQLLQILAK INALPLPANL AAKLPIFSNL GRSVPNQVPP QNQSHLDENS SPSTMDLLTL 360 LSGTPPVCAP NKMESEPERS SQGSDSEKTN SACSDQAACL NLNSGPAMEF PCIGGERSCS 420 STQSPVDDSD CCVEEIHPHL PLQLFSSSPE DNCPPKLPAS RKYFSSDSSN PSEERSPSYS 480 PTVVQKLFPV KRGTLKQGNT LSDGDGDANS RAIRDAGCNT SLQLFAGSSV GNDVGSIQSF 540 PFQAGYTSSS GSDHSPSSMN SDTQDRTGRI IFKLFDKDPS HLPGTLRTQI HNWLLNSPSE 600 MESYIRPGCV VLTVYVSMPL FSWEQFEDKL LHYVKSLIRD FNTDFWGSGR FLLYTGKQLA 660 SHVDGKLRIY KTKRAWRSPE LLSVSPLAVV HGQETSLLLR GRNLNVSGIK FNCSHTGDYT 720 VEDVSGPACQ EPEYNEINLC NFKVSTTASV LGRCFIEIEN GFRITSFPVI IADKPICQEL 780 RLLEYDFSEG AKMEDSMSAY YQHGPGRPGS REEVLHFLNE LGWLFQRKCN SSLLEGPDYK 840 ISRFKFLFIF SVEHDFCSLV KSLLDILLEI NLGKEGLKRV SLEMLSEIHL LNRAVKRRCK 900 NMIDLLLNYS IDDSSDTSKH YIFTPNHVGP GGVTPLHLAA CAFRSDDLVD ALTSDPQEIG 960 LHCWKSLHDA NGLSPYAYAA MRNNHSYNRL VAQKLADKET GQVSVSVGNE IEQLWLEVNQ 1020 DHGPSFHIKR SQKPCSKCAA VAMRYRRIPG LQGLLHRPYI HSMLAIAAVC VCVCLFLRGA 1080 PDIGLVEPFK WENLCYGPI

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence

MEEIGTHVAS PIFIRQASFA VGAGGGGSAR FCSQHPAPRK RSLPFTQQQQ HQQKPSDAWT  60
SKQWEWDSMR FIAKPHECHV PPPPPVMQHR HHARVMQEEQ ELNTAPTTSG LNNTSKSCHA  120
GEGSDHLRLK LGSDSGSGGK AGDAAGTSTS FNSTDEPVSR PNKRVRSGSP GSATYPMCQV  180
DNCEEDLSHA KDYHRRHKVC EFHSKATKAL VSKQMQRFCQ QCSRFHPLPE FDEGKRSCRR  240
RLAGHNRRRR KTQPEDAASR VLLPGSSEKG INSDLDIVNL LAVLARAQGN TEDRGSTLPD  300
KDQLLQILAK INALPLPANL AAKLPIFSNL GRSVPNQVPP QNQSHLDENS SPSTMDLLTL  360
LSGTPPVCAP NKMESEPERS SQGSDSEKTN SACSDQAACL NLNSGPAMEF PCIGGERSCS  420
STQSPVDDSD CCVEEIHPHL PLQLFSSSPE DNCPPKLPAS RKYFSSDSSN PSEERSPSYS  480
PTVVQKLFPV KRGTLKQGNT LSDGDGDANS RAIRDAGCNT SLQLFAGSSV GNDVGSIQSF  540
PFQAGYTSSS GSDHSPSSMN SDTQDRTGRI IFKLFDKDPS HLPGTLRTQI HNWLLNSPSE  600
MESYIRPGCV VLTVYVSMPL FSWEQFEDKL LHYVKSLIRD FNTDFWGSGR FLLYTGKQLA  660
SHVDGKLRIY KTKRAWRSPE LLSVSPLAVV HGQETSLLLR GRNLNVSGIK FNCSHTGDYT  720
VEDVSGPACQ EPEYNEINLC NFKVSTTASV LGRCFIEIEN GFRITSFPVI IADKPICQEL  780
RLLEYDFSEG AKMEDSMSAY YQHGPGRPGS REEVLHFLNE LGWLFQRKCN SSLLEGPDYK  840
ISRFKFLFIF SVEHDFCSLV KSLLDILLEI NLGKEGLKRV SLEMLSEIHL LNRAVKRRCK  900
NMIDLLLNYS IDDSSDTSKH YIFTPNHVGP GGVTPLHLAA CAFRSDDLVD ALTSDPQEIG  960
LHCWKSLHDA NGLSPYAYAA MRNNHSYNRL VAQKLADKET GQVSVSVGNE IEQLWLEVNQ  1020
DHGPSFHIKR SQKPCSKCAA VAMRYRRIPG LQGLLHRPYI HSMLAIAAVC VCVCLFLRGA  1080
PDIGLVEPFK WENLCYGPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	893	898	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein