PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091526.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 617aa MW: 65814 Da PI: 8.1154

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	237	281	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_027091526.1 237 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 281 79****************************************985 PP
2	QLQ	60.9	3.4e-21	169	205	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k XP_027091526.1 169 GPFTPSQWMELEHQALIYKYINANMPIPSYLLSPIRK 205 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MDFGVVSLDN GGGLMCSETT GFASSNTLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT 60 AAAAAAAAAE DDLRDLKVAK ISPDDFSASK AMLFQQRTPL LRSNSSCSNL FPEGLGHQQM 120 LSFSSPNSQS VTLPYYHHPS SIVYSRTTGY GSGGLNAGNM HGVPSGVRGP FTPSQWMELE 180 HQALIYKYIN ANMPIPSYLL SPIRKALDSA GFSSFAGLRP SAFGWGAFHI GFSNSTDPEP 240 GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQPGHSVAGT TNNAAKLTPT 300 SSASAAVVPG GSASNSLGLL QTGANVQCAA SPQLDRTFLE KENLGGRIQD TTGLSMISRR 360 INLKDNQYPL PKPQNPYQQS SRGEFGQVCS DSLLNPLDRS SSLVNCSNYG TCEEVNDHES 420 KSRTGLRQFM DDWPNNRTER SSVVSWPDID LHSDRTQLSI SISMAASDFM SSTSSPTNEK 480 VASSPLRLSR EVEATQMGLG VGTTVNDRTH RQANWIPISW ESSMGGPLAE VLHSTNNGTS 540 ESKSASALNL MTEGWDGSPQ LASSPTGVLQ KAAFVSRSNS STGSSPRAEA SKAHEGGSLC 600 SGSVLGSTLV NPALPAL

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MDFGVVSLDN GGGLMCSETT GFASSNTLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT  60
AAAAAAAAAE DDLRDLKVAK ISPDDFSASK AMLFQQRTPL LRSNSSCSNL FPEGLGHQQM  120
LSFSSPNSQS VTLPYYHHPS SIVYSRTTGY GSGGLNAGNM HGVPSGVRGP FTPSQWMELE  180
HQALIYKYIN ANMPIPSYLL SPIRKALDSA GFSSFAGLRP SAFGWGAFHI GFSNSTDPEP  240
GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQPGHSVAGT TNNAAKLTPT  300
SSASAAVVPG GSASNSLGLL QTGANVQCAA SPQLDRTFLE KENLGGRIQD TTGLSMISRR  360
INLKDNQYPL PKPQNPYQQS SRGEFGQVCS DSLLNPLDRS SSLVNCSNYG TCEEVNDHES  420
KSRTGLRQFM DDWPNNRTER SSVVSWPDID LHSDRTQLSI SISMAASDFM SSTSSPTNEK  480
VASSPLRLSR EVEATQMGLG VGTTVNDRTH RQANWIPISW ESSMGGPLAE VLHSTNNGTS  540
ESKSASALNL MTEGWDGSPQ LASSPTGVLQ KAAFVSRSNS STGSSPRAEA SKAHEGGSLC  600
SGSVLGSTLV NPALPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-106	GRF family protein