PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091235.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 329aa    MW: 37556.4 Da    PI: 5.0213
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.7e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  XP_027091235.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSVFS 58
                    68********************************************9886 PP
2K-box20.91.5e-08109172972
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                       +++ e+ qqe+ + k+++e +++++R + G+  e   + e +  eq Le+ l+++R++K +l
  XP_027091235.1 109 SVDSQIEEIQQEILRYKSQMEDMEKKLRIYEGDPWEINAICEAEYREQILEETLNQVRARKVNL 172
                     567889*******************************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSVFSGN  60
KSLEEIMARY LNLPEHERGR LHNQEYLEKA LGKLKSEADR TNQDVSPVSV DSQIEEIQQE  120
ILRYKSQMED MEKKLRIYEG DPWEINAICE AEYREQILEE TLNQVRARKV NLAQQAAQVN  180
GFTTRSASSL LDWFPHQRDQ DQIPMLNFLD PTGLIPLRAG QADQRIENMV PASLTLPPQS  240
HLDTAADMQQ QLNDHNSPIS KIENDPQVLQ RPHDDHFGQI IDVNLSPWTH LYPTGTDPFP  300
AGQPREGALL ELFLSQLAPV NQDQLDNLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-54MIKC_MADS family protein