PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027091158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26949.9 Da PI: 9.9494 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.3 | 3.2e-31 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+ XP_027091158.1 14 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 63 79***********************************************8 PP | |||||||
2 | K-box | 106.8 | 2.5e-35 | 84 | 178 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL++keL+qLe++Le+++++iRskK+e++l+++++lqk+e +l++en +Lr+k++e XP_027091158.1 84 SCSTQEINAQFYQQESKKLRQQIQMIQNSNRHLMGEGLSSLNVKELKQLENRLERGISRIRSKKHEMILAETDTLQKREIQLEQENACLRAKIAE 178 33478999************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
METRKMGRGK IEIKRIENNT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRVY 60 EYANNNIKST IDRYRKATTD ASNSCSTQEI NAQFYQQESK KLRQQIQMIQ NSNRHLMGEG 120 LSSLNVKELK QLENRLERGI SRIRSKKHEM ILAETDTLQK REIQLEQENA CLRAKIAENE 180 RLQQLSIVPP GQEYNEMQAY LARNLLQLNM MEGVPVFQVP DKKSLQLGLD LVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-104 | MIKC_MADS family protein |