PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091158.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26949.9 Da    PI: 9.9494
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-311463150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+
  XP_027091158.1 14 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 63
                    79***********************************************8 PP

2K-box106.82.5e-35841786100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL++keL+qLe++Le+++++iRskK+e++l+++++lqk+e +l++en +Lr+k++e
  XP_027091158.1  84 SCSTQEINAQFYQQESKKLRQQIQMIQNSNRHLMGEGLSSLNVKELKQLENRLERGISRIRSKKHEMILAETDTLQKREIQLEQENACLRAKIAE 178
                     33478999************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
METRKMGRGK IEIKRIENNT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRVY  60
EYANNNIKST IDRYRKATTD ASNSCSTQEI NAQFYQQESK KLRQQIQMIQ NSNRHLMGEG  120
LSSLNVKELK QLENRLERGI SRIRSKKHEM ILAETDTLQK REIQLEQENA CLRAKIAENE  180
RLQQLSIVPP GQEYNEMQAY LARNLLQLNM MEGVPVFQVP DKKSLQLGLD LVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-104MIKC_MADS family protein