PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090983.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25776.4 Da    PI: 9.8927
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  XP_027090983.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMVSSTQKLHEYIS 59
                    79***********************************************86 PP
2K-box95.77.3e-3271168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++Ls+ eL  L +++++sl+ iR++K++++ +qie+ +kk ++++e++++L 
  XP_027090983.1  71 YQKAVGVDLWSSHHEKMQEQLKKLKEVNRNLRKEIRQRMGESLNDLSYDELGFLIEDVDNSLRAIRERKYKVIGNQIETHKKKVRNVEEIHRNLL 165
                     799999***************************************************************************************98 PP

           K-box  96 kkl 98 
                      +l
  XP_027090983.1 166 LEL 168
                     776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMVSS TQKLHEYISP  60
TATTKQLVDQ YQKAVGVDLW SSHHEKMQEQ LKKLKEVNRN LRKEIRQRMG ESLNDLSYDE  120
LGFLIEDVDN SLRAIRERKY KVIGNQIETH KKKVRNVEEI HRNLLLELDA RGEDPHYGLV  180
DNGGGDYNPV LGYPRVLALR FQPTQPNLHS GGGSSDLTTF ALLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-90MIKC_MADS family protein