PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090942.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 101aa    MW: 11603.9 Da    PI: 9.4128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091460246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     ++WT+   +++ +a + + ++   +W  Iar +g g+++++++ ++  
   XP_027090942.1 14 QSWTAKQNKQFEEALATYDKDtpdRWYNIARAVG-GKSEEEVRRHYEV 60
                     78********************************.**********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    
MASSSMTSSR SSSQSWTAKQ NKQFEEALAT YDKDTPDRWY NIARAVGGKS EEEVRRHYEV  60
LVKDIMQIES DQVPLPNYRS MASNGRGYAN EQRLLKNLKL Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-37MYB_related family protein