PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090909.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 353aa MW: 38967.6 Da PI: 6.008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	137	188	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+++P++ + ++ + a+i A++++k+L+ XP_027090909.1 137 QRMTHIAVERNRRKQMNDYLAVIRSMMPPS---YVQRGDQASIIGGAINFVKELE 188 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MALDAAIHVQ DSFGYFFKEF YTLGGGGANG GGANGGWGYG YGFGLQEEKG FVEMLDSGMD 60 HNLHGNWESS SSSVVMQNVK EWDPNSSPEA CTADQLLLEG GSPAMEEPPE SASTPAAGKR 120 KRRRARTCKN KEELENQRMT HIAVERNRRK QMNDYLAVIR SMMPPSYVQR GDQASIIGGA 180 INFVKELEQH LQTLEAQRRR NSQQEQENGT SPPLFADFFT FPQYSTRSSS TTLHSNTINS 240 PVTTTTSDHQ PQPSRAATDQ NPSALADIEV TMAESHANLK ILSKRRPRQL LKLVAGLQLL 300 WLTVLHLNVT TTLDQKVLYS ISVKLEEGCQ LTTIDEIADA VNHLLGRIEE GAV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MALDAAIHVQ DSFGYFFKEF YTLGGGGANG GGANGGWGYG YGFGLQEEKG FVEMLDSGMD  60
HNLHGNWESS SSSVVMQNVK EWDPNSSPEA CTADQLLLEG GSPAMEEPPE SASTPAAGKR  120
KRRRARTCKN KEELENQRMT HIAVERNRRK QMNDYLAVIR SMMPPSYVQR GDQASIIGGA  180
INFVKELEQH LQTLEAQRRR NSQQEQENGT SPPLFADFFT FPQYSTRSSS TTLHSNTINS  240
PVTTTTSDHQ PQPSRAATDQ NPSALADIEV TMAESHANLK ILSKRRPRQL LKLVAGLQLL  300
WLTVLHLNVT TTLDQKVLYS ISVKLEEGCQ LTTIDEIADA VNHLLGRIEE GAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	124	KRKRRR
2	120	124	RKRRR
3	138	149	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	7e-64	bHLH family protein