PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090906.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 259aa    MW: 28543.2 Da    PI: 9.0426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08167207954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_027090906.1 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MDVDFNKSTP EDQMDLMLLM QMDKLSELTG GFADIHELPM MDFSTNQGSN NNNSSSGAVD  60
HNSHAPSSAF LNLPPSVSFT CSPGQLPQEP SSALPFLSNS SSGRWRNELA GGNGFATESQ  120
KRNSVAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKNQ VQSLERAAAN RPTGIGFPVP MSSGSYLPMA  240
TKGYHHQAAH QNVQHYADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-42bHLH family protein