PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090560.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 491aa    MW: 55962.8 Da    PI: 6.3036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.81.7e-751164844374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetsekn....sseelaalklfsevsPilkf 93 
                     lL ++Ae v++++  +a++lL      as++g+p+qR++ +f+eAL++++ +++     + l  +  ++ +    ++    a+ + ++ +P+  f
  XP_027090560.1 116 LLQAAAEKVANQQYVQARKLLILCGCFASKSGSPVQRVVYCFAEALEKKIEQEWGIApTEELVGKLRKPLDemlaQVYMQPAMMTSQQETPFTLF 210
                     678899*********************************************9764321222322222222222223444445566999******* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     + +ta + Il+av +++rvH iDf+i++G++W  ++qaLa R+e p  +l+i +vg     sk+ +eetg+ L++fAe+l++pf++++ v+++l+
  XP_027090560.1 211 TEFTATESILNAVVSAKRVHLIDFQINNGAHWTLIMQALAVRDECPFeHLKISAVGT----SKKIMEETGKWLSSFAETLNLPFSYKM-VVSDLK 300
                     *******************************************76655*********....9**************************.7999** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl+ + ++++ +E la+ + ++l + l      +++ ++++ ++++l+P++vvv e ea++n+++F erf  al  +sa+fd++++ + ++   r
  XP_027090560.1 301 DLRENYFELEFDEELAIYSDMRLWTQL----VWPNHLKALMGVIRKLKPRIVVVKEFEANTNAPNFPERFDAALLLFSAMFDCINSCMDHHVLYR 391
                     *********************999998....45555667*************************************************9999*** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ E++++ r ++n++ +eg er++rhe+ + Wr+ + e+G+ +  l+ +  ++a+l lr  +     +v+ + ++l++gWk+ p  s+SaW+
  XP_027090560.1 392 KMTEEVIFPRMVQNIIVAEGMERFQRHEKIGFWRKLFAEFGMVETDLTRSSLCEASLFLRSSErLSSCTVDMDGKCLIMGWKGAPFQSLSAWK 484
                     ***************************************************************9888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MDTTLDENSV PQIYYLDEGK KESPFLPLTS LEFLKQHGTK LKRLREGNLN ELSSDTPMDT  60
SHHPALSTPS LMKAAKAQLF KFNSQKIDVL SYVSSHIGTL SGLRSEVPGD LELALLLQAA  120
AEKVANQQYV QARKLLILCG CFASKSGSPV QRVVYCFAEA LEKKIEQEWG IAPTEELVGK  180
LRKPLDEMLA QVYMQPAMMT SQQETPFTLF TEFTATESIL NAVVSAKRVH LIDFQINNGA  240
HWTLIMQALA VRDECPFEHL KISAVGTSKK IMEETGKWLS SFAETLNLPF SYKMVVSDLK  300
DLRENYFELE FDEELAIYSD MRLWTQLVWP NHLKALMGVI RKLKPRIVVV KEFEANTNAP  360
NFPERFDAAL LLFSAMFDCI NSCMDHHVLY RKMTEEVIFP RMVQNIIVAE GMERFQRHEK  420
IGFWRKLFAE FGMVETDLTR SSLCEASLFL RSSERLSSCT VDMDGKCLIM GWKGAPFQSL  480
SAWKLQNEYK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-45GRAS family protein