PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090435.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 460aa MW: 51345.9 Da PI: 9.1051

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	66	119	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_027090435.1 66 PRLRWTPDLHRCFVQAVEKLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 119 8****************************************************7 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	118	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT++++ +v+av++lGg t+k++ + m+ kg++ ++ks++q+y+ XP_027090435.1 67 RLRWTPDLHRCFVQAVEKLGGQeraTPKLVLQLMNvKGLSIAHVKSHLQMYR 118 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEEKGNFSDG LPEVNSSDHG MKDGGGSDDH KTSGSSSSNS MAVESTGKKL SLSATGVRQY 60 VRSKMPRLRW TPDLHRCFVQ AVEKLGGQER ATPKLVLQLM NVKGLSIAHV KSHLQMYRSK 120 NIDDHGQVIN ERGYPFRSMD HFLRNGWQFA TLDRGIRSSF SYSYSDDNWT SNMTWRAMPG 180 TVDDTNIKRG TVFHNTSLGR IYGGIGANAI NGSLFGTQER RKSYNYMEDF TWLPDTKINH 240 KGIWPSRGET NSELTQIYKE KRVESIVNAA SPETKCSGTK TEKANTAKRK APDNGVDLNL 300 SLSMNLRQGE SKRTHNWDEE EKDSTLSLSL FSASNEEKCS IDLNMSSTFN SEILLVLAQE 360 DSPMIACFVR TRIIKVDKWG GCLLSLQHWA QQNSASSPLS AGPRIMTVVA CMIRTVAQSR 420 FVDAVLQSLL QNGFLHLQHF LPLYAALQLG SQGFNIILQL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEEKGNFSDG LPEVNSSDHG MKDGGGSDDH KTSGSSSSNS MAVESTGKKL SLSATGVRQY  60
VRSKMPRLRW TPDLHRCFVQ AVEKLGGQER ATPKLVLQLM NVKGLSIAHV KSHLQMYRSK  120
NIDDHGQVIN ERGYPFRSMD HFLRNGWQFA TLDRGIRSSF SYSYSDDNWT SNMTWRAMPG  180
TVDDTNIKRG TVFHNTSLGR IYGGIGANAI NGSLFGTQER RKSYNYMEDF TWLPDTKINH  240
KGIWPSRGET NSELTQIYKE KRVESIVNAA SPETKCSGTK TEKANTAKRK APDNGVDLNL  300
SLSMNLRQGE SKRTHNWDEE EKDSTLSLSL FSASNEEKCS IDLNMSSTFN SEILLVLAQE  360
DSPMIACFVR TRIIKVDKWG GCLLSLQHWA QQNSASSPLS AGPRIMTVVA CMIRTVAQSR  420
FVDAVLQSLL QNGFLHLQHF LPLYAALQLG SQGFNIILQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-37	G2-like family protein