PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090287.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 383aa MW: 44184.3 Da PI: 7.1376

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.6e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v+++ leHnHel XP_027090287.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDIILEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDIILEHN HELHIAQCAH 120 MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELMEKEAGGM ENVGYTREDL KRYLRTRWER 180 SLKYGEAGSM LNYFQEQTLE NLSFFHAVQL DCEEQITNIF WADAGMLIDY KFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACIERQRSRR 360 LCAVVTRQTA AAADADADWW WLG

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDIILEHN HELHIAQCAH  120
MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELMEKEAGGM ENVGYTREDL KRYLRTRWER  180
SLKYGEAGSM LNYFQEQTLE NLSFFHAVQL DCEEQITNIF WADAGMLIDY KFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL  300
TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACIERQRSRR  360
LCAVVTRQTA AAADADADWW WLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-64	FAR1 family protein