PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090201.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 699aa MW: 75598.4 Da PI: 6.3109

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.5e-09	268	288	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_027090201.1 268 PCPDFRK-GTCQRGDACEYAHG 288 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MCNGSKRKDC AVDLAMGDFA SSSSELLEFS ASDDLSAFMV AVEREGHGID ELAVWYGRRI 60 GSKEMGLEER TPLMMASMFG SKRVVNYILE KGGIDVNKTC GSDGATALHC AAAGGSAASL 120 EIVRLLIDAS ADVNSVDANG KRPVDLIAPF QNSSFNLRSK ALEVILNGGN YTEGASESDD 180 RPTEREDGRV SPPLPSKDGM EKKEYPVDPS LPDIKNGIYG TDEFRMYTFK IKPCSRAYSH 240 DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGTCQRG DACEYAHGIF ECWLHPAQYR 300 TRLCKDETNC TRRVCFFAHK PEELRPLYAS TGSAVPSPRS FSSSASTFDI ASISPLALGS 360 PSIMMPPTST PPMTPSGASS PIGGSMWPNQ PTLAPPTLQL PGSRLKAAIN ARDIDLDAEL 420 LGLDGNRQWR QQLLDDLSSL SSPSSWNHGL GTPGAFAASS VEQNSDGIRH GGLKPTNLDD 480 VFGSLDSTIL SQLQGLSTDA GLNQLLSPTA HQMRQNMNQQ LRSSYPSNLA SSSIRTSSAF 540 GMDPSGSTAT VLNPRSAAFA KRSQSFIDRS AVNRHSGISS PISSASMMLS PFSDWSSPDG 600 KLDWGIQKEE INKLRKSASF GFRNSGGNFV STAASRSTAA NKPDASWVES SVKDGPSVTP 660 GQAEFHGKDH QQYLLNSGGS EMHPSWVDQL YMEQEHILA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MCNGSKRKDC AVDLAMGDFA SSSSELLEFS ASDDLSAFMV AVEREGHGID ELAVWYGRRI  60
GSKEMGLEER TPLMMASMFG SKRVVNYILE KGGIDVNKTC GSDGATALHC AAAGGSAASL  120
EIVRLLIDAS ADVNSVDANG KRPVDLIAPF QNSSFNLRSK ALEVILNGGN YTEGASESDD  180
RPTEREDGRV SPPLPSKDGM EKKEYPVDPS LPDIKNGIYG TDEFRMYTFK IKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGTCQRG DACEYAHGIF ECWLHPAQYR  300
TRLCKDETNC TRRVCFFAHK PEELRPLYAS TGSAVPSPRS FSSSASTFDI ASISPLALGS  360
PSIMMPPTST PPMTPSGASS PIGGSMWPNQ PTLAPPTLQL PGSRLKAAIN ARDIDLDAEL  420
LGLDGNRQWR QQLLDDLSSL SSPSSWNHGL GTPGAFAASS VEQNSDGIRH GGLKPTNLDD  480
VFGSLDSTIL SQLQGLSTDA GLNQLLSPTA HQMRQNMNQQ LRSSYPSNLA SSSIRTSSAF  540
GMDPSGSTAT VLNPRSAAFA KRSQSFIDRS AVNRHSGISS PISSASMMLS PFSDWSSPDG  600
KLDWGIQKEE INKLRKSASF GFRNSGGNFV STAASRSTAA NKPDASWVES SVKDGPSVTP  660
GQAEFHGKDH QQYLLNSGGS EMHPSWVDQL YMEQEHILA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-167	C3H family protein