PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090178.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 300aa MW: 33916.6 Da PI: 5.7462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	125	171	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L +l+P + kKl+K ++Le A+++I +Lq XP_027090178.1 125 YHVAAERKRREKLSDLFIALSKLVPGL-----KKLDKTSVLEDATKHIEELQ 171 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MAGFNNQYII NSWPDEQVDD EFFDIKPFLS EVFPAISYCN SESIPIQMPQ TCMKQKFKQL 60 NDTNLSPSHP TVESSQKGSS PFSTTQFISF GKSSPYSSDG EKLYEDDIVY NSRSPIRRTP 120 IQAQYHVAAE RKRREKLSDL FIALSKLVPG LKKLDKTSVL EDATKHIEEL QERLKTLEEG 180 EKNNSTAPNT MAERCIISTC SDNTSSFKGT TLEQIPEIKV KIQGKSVLIK ILCEKKYYGS 240 ISSMSTELEK LHLTILDTRI LRFGSCTLDI TLKAQMDSAF SVTVEDIIEH LQLGIFQLQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	ERKRRE
2	131	136	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-41	bHLH family protein