PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090177.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 209aa    MW: 23958.6 Da    PI: 8.2314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-123480455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     h ++Er+RR+++ + f  L +l+P +     kKl+Ka++Le A ++Ik+Lq
  XP_027090177.1 34 YHVQAERKRREKLSDLFIALSKLVPGL-----KKLDKASVLEDANKHIKELQ 80
                    6899***********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MNNSSDENHF HFSEDEIVYN SRSPIRRTPI QAQYHVQAER KRREKLSDLF IALSKLVPGL  60
KKLDKASVLE DANKHIKELQ ERLKTLEEEK KNNSTAPEIM VERCIISTCS GNTSSFKGAT  120
LELIPEIKVK IQGKNVLVKI LCEKKYHGSI SSMSSELEKL HLTILDTRIL RFGCCTFDIT  180
LKAQMDNEFS VTMKDIIEHL QQGIFQLHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944ERKRRE
24045RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-43bHLH family protein