PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090123.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 316aa    MW: 33819.3 Da    PI: 5.0041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16135181455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_027090123.1 135 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 181
                     6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MSDPYGTDDR SSFEPDSEPG GPPEPEDMNV FLHNLFQNSP ATAGSSSLYR GSASMINSSS  60
AASFDFSDPG GFFAGEVKGR LEKTFSLAAA GDCDAVTSSM DRGEFSGANK GLEASDAAIN  120
QAQPRSTKRS RSAEVHNLSE KRRRSRINEK LKALQNLIPN SNKTDKASML DEAIEYLKQL  180
QLQVQMLTIR NGLSFHPNYV SGSLQPMQLP MDFNEGDVMP NTSGGKHTLS SNQEVAMQAA  240
FGVSNPKISS QQLAIASMTN NSSSAFSFGL QSSAQNNPGV PNYLASAKDL CREDTLMQFP  300
LDISRSGNNS SSGVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-37bHLH family protein