PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089827.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 353aa MW: 39656.8 Da PI: 4.4746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	187	230	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_027089827.1 187 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 230 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MEFYSEHNFL EELLALRSEP WEGSVPMGLM NHDFYSNVFG SDLAAGFAEN TIPIPPPNAS 60 LEGYSLPIDQ TQSLNYSAFG EFYGHFGDEL SPPELTDSSC NKLDTPQFPS QEDLSIMDDD 120 DQGLFAGNNN SVQSLELVRP PLCKVEELQE PFQSAEALVP LFNMGMVCPE RKNNKSKKLN 180 GQPSKNLMAE RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LERINNIQEE 240 KDVVSNQASL MSIFKDVKPN EVLVRNSPKF DVERRNSDTR IEICCSGKPG LLLSTLTTLE 300 ALGLEIQQCV ISCFNDFTVQ ASCSEELEQR GILSSEDIKQ ALFRNAGYGG RCL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MEFYSEHNFL EELLALRSEP WEGSVPMGLM NHDFYSNVFG SDLAAGFAEN TIPIPPPNAS  60
LEGYSLPIDQ TQSLNYSAFG EFYGHFGDEL SPPELTDSSC NKLDTPQFPS QEDLSIMDDD  120
DQGLFAGNNN SVQSLELVRP PLCKVEELQE PFQSAEALVP LFNMGMVCPE RKNNKSKKLN  180
GQPSKNLMAE RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LERINNIQEE  240
KDVVSNQASL MSIFKDVKPN EVLVRNSPKF DVERRNSDTR IEICCSGKPG LLLSTLTTLE  300
ALGLEIQQCV ISCFNDFTVQ ASCSEELEQR GILSSEDIKQ ALFRNAGYGG RCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-75	bHLH family protein