PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089825.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 302aa MW: 31372.3 Da PI: 9.5846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.8e-09	106	130	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ + Ck+Gd+C+FaHg XP_027089825.1 106 KTRLCNKYNTAEGCKFGDKCHFAHG 130 8***********************8 PP
2	zf-CCCH	37.8	3.2e-12	269	294	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ G C +GdrC+FaHg+ XP_027089825.1 269 FKTKLCENFAK-GSCTFGDRCHFAHGE 294 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MEFGGARKRG RPDGGAATNG NGGIKKSKQE TESFSSGIGS KSKPCTKFFS TSGCQFGEGC 60 HFLHYVPGGI KAVTQILGSN PALPAASRNP VVPPSFPDGS SPPAVKTRLC NKYNTAEGCK 120 FGDKCHFAHG AWELGKPTAP VHEDPRATGP LPGRFGGRME STPPDFGAAG SFGASATAKI 180 SVDASLAGAI IGKGGVNSKH ICRTTGAKLA IRDHDSDPNS KNIELEGTFD QIKLATQMVR 240 ELIANVSSAA RPPLKNHGGP KGSAAASNFK TKLCENFAKG SCTFGDRCHF AHGEEELRSS 300 GI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-61	C3H family protein