PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089478.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 528aa    MW: 58853.4 Da    PI: 5.5548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.73e-1291585281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cAeavs+ + + aq l+++l++++s +gdp+qRl ay++e+L+arl++s+s +yk+l+++e +     e +++++++++++P++kf++
  XP_027089478.1 158 LKQLLLACAEAVSNAEISTAQGLMNELEQRVSISGDPIQRLSAYMMEGLRARLLSSGSIIYKKLKCKEPT---GPELMSYMHFLYQICPYFKFAY 249
                     689******************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN  I ea+e+e+r+H+iDf + qG QW++++qaLa Rp+gpp +R+Tgv++++s+  +   l  +g+rLa++A+++gvpfef+  +a +  +
  XP_027089478.1 250 MSANVVIGEAMEHENRIHVIDFCLAQGSQWVSFIQALAHRPGGPPFIRVTGVDDSQSVhaRGGGLDVVGQRLANVAASCGVPFEFHG-AALSGCE 343
                     ******************************************************9998889999***********************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L+v++gEalaVn+ ++lh+++desv++ ++rd++L+l+kslsPkvv++veqe+++n+++F +rf+e+leyy+a+f+s++a+ pr++++ri
  XP_027089478.1 344 VELENLKVQHGEALAVNFPYMLHHMPDESVNTMNHRDRLLRLIKSLSPKVVTLVEQESNTNTAPFYHRFCETLEYYTAMFESIDATRPRNDKQRI 438
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn+vacega+r+erhe ++kWr rl +aGF p pls ++ + ++ +l++++s+ y + +++g+l+lgWk+r+L ++SaWr
  XP_027089478.1 439 SAEEHCIARDIVNIVACEGADRVERHELFGKWRLRLAMAGFVPCPLSFSVGNAIRDMLKEYSSN-YWLVDRDGALYLGWKNRALATCSAWR 528
                     **************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MLYHQPFQQI ESYNLSPFQV LNSNVCADNS SQGAQVSFQA CNEQFATLES LPMTDYVNSD  60
SPSTVSVSSN RSPFSPQCSQ SYMSDVHHSS DNTYGSPLSG SSGVDDSNEL RNVLRELEIK  120
LMEESEIDDS SSCSVNNVVG QPFQQGSRVV QMAHTMDLKQ LLLACAEAVS NAEISTAQGL  180
MNELEQRVSI SGDPIQRLSA YMMEGLRARL LSSGSIIYKK LKCKEPTGPE LMSYMHFLYQ  240
ICPYFKFAYM SANVVIGEAM EHENRIHVID FCLAQGSQWV SFIQALAHRP GGPPFIRVTG  300
VDDSQSVHAR GGGLDVVGQR LANVAASCGV PFEFHGAALS GCEVELENLK VQHGEALAVN  360
FPYMLHHMPD ESVNTMNHRD RLLRLIKSLS PKVVTLVEQE SNTNTAPFYH RFCETLEYYT  420
AMFESIDATR PRNDKQRISA EEHCIARDIV NIVACEGADR VERHELFGKW RLRLAMAGFV  480
PCPLSFSVGN AIRDMLKEYS SNYWLVDRDG ALYLGWKNRA LATCSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein