PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23566.2 Da PI: 9.8506

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.3	5.7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027089366.1 9 KRIEDATTRQVTFSKRRKGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59 79***********************************************96 PP
2	K-box	65	2.6e-22	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + + ++ ++e+a L+k+ie L+++ R+llG++L+s s+ eLqq+e+qLeksl+ iRs+K l++e i++l++ k l+++n +Lr+ +ee XP_027089366.1 81 QMDLESLQHFEEEVAILRKKIELLEETTRKLLGDGLDSSSIGELQQVERQLEKSLSIIRSRKILLFCERINQLKEEGKILRKKNAELRETYEE 173 356677899*******************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MARGKTQIKR IEDATTRQVT FSKRRKGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS 60 SATSTIERYQ KSIKNRPTSK QMDLESLQHF EEEVAILRKK IELLEETTRK LLGDGLDSSS 120 IGELQQVERQ LEKSLSIIRS RKILLFCERI NQLKEEGKIL RKKNAELRET YEERQLELSI 180 GQQFSSLEQV KEVETQLFIG LPNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-71	MIKC_MADS family protein