PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088989.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 913aa    MW: 100859 Da    PI: 6.8189
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_027088989.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_027088989.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp119.62.5e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS Wrs+k
  XP_027088989.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSYWRSVK 337
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    
MRLSPAGFTQ QPPEGEKRCL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA SYLPADLGSP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SYWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPL GLPSFNGMKD DEMGINSPLM WFRGDVGERA LHCLNYQGIG  420
VAPWMQPRVD APILGMQTDL YQAMAAAALQ EMRAVGPSKQ ALSSLLQFHQ TQGIANRPTS  480
LVQPQTLQQS QPEPTFLQGL PGSQSPAQSQ SQAPSLLIQQ QLHHQNSYSN LQQQQQQQQQ  540
PLPQQQPLPQ QQQQVNDHQQ VSSVATVLPQ LTSSSQVQSH SIQAISPMHQ QSFSDSNGNS  600
VTSSILSPLQ SLLGSVPQDE ASHLLSVPRS SSLLSPSGWP PKRVAIDPIL PSGVSQCISP  660
LMEEMGPPNN SISQNSVSLP PFPGRECSID QEGTNDPQNS LLFGVNIDSS SLLIQNGMSN  720
LRGVVSDSGC TTIPFPSSNY AGTTGTKFQQ NPEMTPSSCI QESGFLRSPD NIGQGNPATR  780
TFVKVYKSGS FGRSLDISKF SSYHELRIEL ARLFGLEGLL EDPLRSGWQL VFVDRENDVL  840
LLGDDPWPEF VNNVWCIKIL SPQEVQHMGK RGLELLNSAP NSRLPNGSCD DYASLQEPRN  900
AITRMTSVGS LNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein