PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027088907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48486.1 Da PI: 8.7786 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 8.7e-12 | 88 | 113 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C+yG++C+F+H+p XP_027088907.1 88 GEPDCSYYIRTGLCRYGATCRFNHPP 113 6899********************97 PP | |||||||
2 | zf-CCCH | 39.7 | 7.9e-13 | 133 | 158 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_027088907.1 133 GQPECQYYLKTGTCKFGATCKFHHPR 158 5799********************96 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 182 | 204 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_027088907.1 182 ECAYYLRTGHCKFGSTCKFHHPQ 204 7********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 305 | 331 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_027088907.1 305 PGQPECQFYMKTGDCKFGAVCKFHHPR 331 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 5.9e-13 | 351 | 377 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_027088907.1 351 PGEPLCIFYSRYGICKFGPSCKFDHPM 377 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MPALAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS 60 SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA 120 TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE 180 IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI 240 PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMLQRETV 300 FPERPGQPEC QFYMKTGDCK FGAVCKFHHP RERILPAPDC GLSPIGLPLR PGEPLCIFYS 360 RYGICKFGPS CKFDHPMGVF TYNVSSSSTE PPTVRRLLGS SSGTGPLTLA SEGLVEASST 420 KSRLLPLSEA RKPSGDTSID PEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-179 | C3H family protein |