PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088906.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 474aa    MW: 51626.5 Da    PI: 8.6809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.5e-1288113227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+++ rtG C+yG++C+F+H+p
  XP_027088906.1  88 GEPDCSYYIRTGLCRYGATCRFNHPP 113
                     6899********************97 PP

2zf-CCCH39.68.5e-13133158227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_027088906.1 133 GQPECQYYLKTGTCKFGATCKFHHPR 158
                     5799********************96 PP

3zf-CCCH35.91.3e-11182204527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++rtG+Ck+G++CkF+H++
  XP_027088906.1 182 ECAYYLRTGHCKFGSTCKFHHPQ 204
                     7********************97 PP

4zf-CCCH38.51.9e-12336362127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ CkF+H++
  XP_027088906.1 336 PGQPECQFYMKTGDCKFGAVCKFHHPR 362
                     5789*********************96 PP

5zf-CCCH406.4e-13382408127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_027088906.1 382 PGEPLCIFYSRYGICKFGPSCKFDHPM 408
                     589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MPALAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS  60
SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA  120
TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE  180
IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI  240
PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMVGQSEA  300
ANVGSQGIHS SYSSSSLPIG YYALQLQRET VFPERPGQPE CQFYMKTGDC KFGAVCKFHH  360
PRERILPAPD CGLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNVSSSST  420
EPPTVRRLLG SSSGTGPLTL ASEGLVEASS TKSRLLPLSE ARKPSGDTSI DPEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0C3H family protein