PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088757.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 361aa MW: 38874.9 Da PI: 6.9284

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95	6e-30	176	229	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_027088757.1 176 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 229 59*****************.******************************8 PP
2	Myb_DNA-binding	48.1	2.7e-15	178	228	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++++++vd+v+ lG + +ktI++ m+ +g+t++++ s++qky+ XP_027088757.1 178 RLVWTPQLHKRFVDVVAHLGIKnaVPKTIMQLMNvEGLTRENVASHLQKYR 228 789*****************9*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGEEVKINGY DNGSGSGSGD DDRVSDWEAG LPGIDDLTPL SQALIPPDLA SAFRITPEPS 60 RSMLDVNRES QKILASLCGG ASGGSSHHSQ ALSSSNNFKS FHDGTTITGN RTHRDNMIID 120 IDETTDLTRE GSDSRKTRRL TESPTEEADS SAAGKNSCTN NNENCGEDVS ARTLKRPRLV 180 WTPQLHKRFV DVVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGLSTE 240 GPSSSDHLFA STPVPPSLHD STGGGSGGAA TGHGHGHGNS NGHVGMPIPM PYPPPAGAQM 300 VSVPMMGMPG PTPGGYHGYE SHHHHHHHHH QYGMVQQQRD WAGNKFATLA PYHHHVAPND 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGEEVKINGY DNGSGSGSGD DDRVSDWEAG LPGIDDLTPL SQALIPPDLA SAFRITPEPS  60
RSMLDVNRES QKILASLCGG ASGGSSHHSQ ALSSSNNFKS FHDGTTITGN RTHRDNMIID  120
IDETTDLTRE GSDSRKTRRL TESPTEEADS SAAGKNSCTN NNENCGEDVS ARTLKRPRLV  180
WTPQLHKRFV DVVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGLSTE  240
GPSSSDHLFA STPVPPSLHD STGGGSGGAA TGHGHGHGNS NGHVGMPIPM PYPPPAGAQM  300
VSVPMMGMPG PTPGGYHGYE SHHHHHHHHH QYGMVQQQRD WAGNKFATLA PYHHHVAPND  360
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	5e-71	G2-like family protein