PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027088622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 24260.6 Da PI: 9.367 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.6 | 5.7e-25 | 26 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ +++ + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027088622.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYESD-VMPKRTRAPTKTGCGAKMVIALFRgTMKYRVHDLVLEHNHEL 113 6*****************9998.8999****************9999.999*******************999****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MDCSKLAEDG TPELGMEFNS KRDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYES DVMPKRTRAP TKTGCGAKMV IALFRGTMKY RVHDLVLEHN HELHIAQCSH 120 MMPSQRKMSE AQGFQAEISV DAGFSLKQSY ELMGKEASGM ENVGYTREDL KRYLRTRWER 180 SLKYGETGSM LNYFQEQTLE NPSFFHAYS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-24 | FAR1 family protein |