PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088559.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 267aa    MW: 30697.1 Da    PI: 8.609
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.15.9e-2326113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+Y  ++GFsvrk++ +k  ++g +t+r++ C keg +++ + + +  +rtra t+tgC ak+++ + + + k++v++l+leHnHel
  XP_027088559.1  26 KFYNKYTFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMLKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113
                     6*****************9998.8999****************9999.999*******************999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MDCSKLAEDG TPELGMEFNS EEDAYKFYNK YTFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMLKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSE AQGFQAEISE DTGLSLKQSH ELMGKEAGGM GNVGYTREDL KRYLRTRRER  180
SLKFGEAEAM CEKRPSTILT DQDHAMAAAL SVVMPEIFHG RCTFHIRRNF MKHLGNHYKE  240
NSDLPYMFGA CMYEFEEVNN SIGCGRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-22FAR1 family protein