PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088404.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 266aa    MW: 28633 Da    PI: 6.5069
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.96e-5364158195
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl+++re++g
  XP_027088404.1  64 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRFREFDG 158
                     69******************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MELGGNGGFT GYRRFPQPNS GMTRAAEISM GLPSKTSHNT PPSSSSSSPA AAADHTMMDG  60
ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFIT GEANERCQRE  120
QRKTITAEDV LWAMSKLGFD DYIEPLTLYL HRFREFDGGE RGSLRAAHDL AVGKRANIDH  180
LAAAAGFGLG GGGFATYPPP HFHLPHHPPL VAAGFFTTAA VPFHMNGFLK DPSSTGGGQA  240
TSSQATAAVV ANDGGHQEQA FDNCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-66NF-YB family protein