PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088350.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 494aa MW: 53908.9 Da PI: 5.3912

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	259	313	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fv+av++LGGse+AtPk +l++m+ +gLt++hvkSHLQkYR+ XP_027088350.1 259 KPRMRWTPELHEIFVDAVNKLGGSERATPKGVLKHMNKEGLTIYHVKSHLQKYRT 313 79****************************************************8 PP
2	Myb_DNA-binding	60.9	2.6e-19	261	312	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++vdav++lGg t+k + ++m+ +g+t +++ks++qky+ XP_027088350.1 261 RMRWTPELHEIFVDAVNKLGGSeraTPKGVLKHMNkEGLTIYHVKSHLQKYR 312 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MDAHSSLFVQ RTGESLSTMG ASGATSPCLP NLPPPLVEKY PQLPDSLHVT SEQVLSTNTL 60 PSRPAPLASR SGAVGHQFST TSGFPRDTKF PPISPQGSQS QNYPFLSKSL RAETSLETIP 120 SSFSGVHSAP VDSYHIGNGG NGNTSWGKDA LQDFPDFSGN VPVQNDQVES LKGVIASEDH 180 AKRTEWNEWA DDLISVDDSL DSNWGDLLVD VSFPDPEPKV LKLSPEVPLR EAQPSSHTPV 240 SSVQSIDVSS PSSAAPLAKP RMRWTPELHE IFVDAVNKLG GSERATPKGV LKHMNKEGLT 300 IYHVKSHLQK YRTARYKPEP SEGTTEKKSP TVTDMTSLDL KTTTGITEAL RLQMEVQKQL 360 HEQLEIQRSL QLRIEEQGKY IQLMLEQQKK IEEERSKKKD SNPVEASLAP SKAVEPLPDD 420 EKSETLEKNN VAKALEKENE AKVLSSGDAG VTAEQTQTPN RKQKSPEGKT SEDNDQDGNA 480 SPVKRAKVDG SLNS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MDAHSSLFVQ RTGESLSTMG ASGATSPCLP NLPPPLVEKY PQLPDSLHVT SEQVLSTNTL  60
PSRPAPLASR SGAVGHQFST TSGFPRDTKF PPISPQGSQS QNYPFLSKSL RAETSLETIP  120
SSFSGVHSAP VDSYHIGNGG NGNTSWGKDA LQDFPDFSGN VPVQNDQVES LKGVIASEDH  180
AKRTEWNEWA DDLISVDDSL DSNWGDLLVD VSFPDPEPKV LKLSPEVPLR EAQPSSHTPV  240
SSVQSIDVSS PSSAAPLAKP RMRWTPELHE IFVDAVNKLG GSERATPKGV LKHMNKEGLT  300
IYHVKSHLQK YRTARYKPEP SEGTTEKKSP TVTDMTSLDL KTTTGITEAL RLQMEVQKQL  360
HEQLEIQRSL QLRIEEQGKY IQLMLEQQKK IEEERSKKKD SNPVEASLAP SKAVEPLPDD  420
EKSETLEKNN VAKALEKENE AKVLSSGDAG VTAEQTQTPN RKQKSPEGKT SEDNDQDGNA  480
SPVKRAKVDG SLNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-83	G2-like family protein