PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088349.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 495aa MW: 53910.9 Da PI: 5.2775

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.3	2.2e-30	259	314	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fv+av++LGGse AtPk +l++m+ +gLt++hvkSHLQkYR+ XP_027088349.1 259 KPRMRWTPELHEIFVDAVNKLGGSETgATPKGVLKHMNKEGLTIYHVKSHLQKYRT 314 79*******************98659*************************8 PP
2	Myb_DNA-binding	60.8	2.9e-19	261	313	1	48
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e++vdav++lGg t+k + ++m+ +g+t +++ks++qky+ XP_027088349.1 261 RMRWTPELHEIFVDAVNKLGGSetgaTPKGVLKHMNkEGLTIYHVKSHLQKYR 313 89****************99****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MDAHSSLFVQ RTGESLSTMG ASGATSPCLP NLPPPLVEKY PQLPDSLHVT SEQVLSTNTL 60 PSRPAPLASR SGAVGHQFST TSGFPRDTKF PPISPQGSQS QNYPFLSKSL RAETSLETIP 120 SSFSGVHSAP VDSYHIGNGG NGNTSWGKDA LQDFPDFSGN VPVQNDQVES LKGVIASEDH 180 AKRTEWNEWA DDLISVDDSL DSNWGDLLVD VSFPDPEPKV LKLSPEVPLR EAQPSSHTPV 240 SSVQSIDVSS PSSAAPLAKP RMRWTPELHE IFVDAVNKLG GSETGATPKG VLKHMNKEGL 300 TIYHVKSHLQ KYRTARYKPE PSEGTTEKKS PTVTDMTSLD LKTTTGITEA LRLQMEVQKQ 360 LHEQLEIQRS LQLRIEEQGK YIQLMLEQQK KIEEERSKKK DSNPVEASLA PSKAVEPLPD 420 DEKSETLEKN NVAKALEKEN EAKVLSSGDA GVTAEQTQTP NRKQKSPEGK TSEDNDQDGN 480 ASPVKRAKVD GSLNS

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MDAHSSLFVQ RTGESLSTMG ASGATSPCLP NLPPPLVEKY PQLPDSLHVT SEQVLSTNTL  60
PSRPAPLASR SGAVGHQFST TSGFPRDTKF PPISPQGSQS QNYPFLSKSL RAETSLETIP  120
SSFSGVHSAP VDSYHIGNGG NGNTSWGKDA LQDFPDFSGN VPVQNDQVES LKGVIASEDH  180
AKRTEWNEWA DDLISVDDSL DSNWGDLLVD VSFPDPEPKV LKLSPEVPLR EAQPSSHTPV  240
SSVQSIDVSS PSSAAPLAKP RMRWTPELHE IFVDAVNKLG GSETGATPKG VLKHMNKEGL  300
TIYHVKSHLQ KYRTARYKPE PSEGTTEKKS PTVTDMTSLD LKTTTGITEA LRLQMEVQKQ  360
LHEQLEIQRS LQLRIEEQGK YIQLMLEQQK KIEEERSKKK DSNPVEASLA PSKAVEPLPD  420
DEKSETLEKN NVAKALEKEN EAKVLSSGDA GVTAEQTQTP NRKQKSPEGK TSEDNDQDGN  480
ASPVKRAKVD GSLNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	8e-81	G2-like family protein