PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088309.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 317aa    MW: 36350.8 Da    PI: 6.5993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1631116798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +  +  +g+l lpk+f++e+g +      ++l+ +sg  ++v +  +k  ++ +l++GW++F++ + L  g f+ Fk++g+sef   v +f+
  XP_027088309.1  31 TQPAVDEGQLGLPKNFVKEYGDE--ICSSVRLNVPSGGIFRVGI--EKDENMLWLRDGWQRFAEHHSLTFGHFLWFKYKGNSEF--DVAIFD 116
                     445556678***********865..4449***************..**********************************9999..888876 PP
2B357.42.7e-18216308397
                     EE-..-HHHHTT-E.E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrl.vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + ++++++l+++ +  +p +f +++       +k + l+d++g++W+v +i  ++++ + l+kGW  F+++++L++gD++vF++++++    +v+
  XP_027088309.1 216 SMTMKEYNLSRCYIvHVPAEFSSTYlR-T--DKKSVELQDSDGNKWTVGVI-VRHGRVISLSKGWGYFCRDHKLCSGDVCVFEVIKSRPVVIKVT 306
                     55678899999766479*****99953.3..3356***************5.5666679************************998766666666 PP

                     EE CS
              B3  96 vf 97 
                     +f
  XP_027088309.1 307 IF 308
                     66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MEDSDNQEGS TMKNNRDWQS LDASSFYRII TQPAVDEGQL GLPKNFVKEY GDEICSSVRL  60
NVPSGGIFRV GIEKDENMLW LRDGWQRFAE HHSLTFGHFL WFKYKGNSEF DVAIFDLTAT  120
EIDYQCCSNN SKKFNPVAET TVPEPEHDAF CSAKADDRHP IEISSSSETE EVEIRDVTTD  180
SGNPRSIRRR SRRRGKKISE HDVVTRLFKS DNPYFSMTMK EYNLSRCYIV HVPAEFSSTY  240
LRTDKKSVEL QDSDGNKWTV GVIVRHGRVI SLSKGWGYFC RDHKLCSGDV CVFEVIKSRP  300
VVIKVTIFPA RESVEVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRSRRRGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-25B3 family protein