PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088123.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 856aa MW: 94787.8 Da PI: 6.9652

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.8e-29	537	587	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_027088123.1 537 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 587 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MDEFGTRHRE NLDAALHSAS SGQPEGFLVE GSDMNRRLWV GPTGDPTPNT SVRKRLVQAI 60 EYLRKSTSDK DALIQLWVPV KRGGGRVLST KNQPFSLDPN CRSLAEYRHI SRNYQFAAEE 120 DSKELVGLPG RVFLKKLPEW TPDVRFFMGE EYPRVNHAQQ YNVRGCLALP VFQRGSGTCL 180 GVVEIVSTAQ KVNYRPELEN VCKALEAVDL SSSIISTSPN MKDCDESYQL ALVDIRSVLK 240 YVCDMNKLPL AQTWASCSRQ GKGGCRHSEE NYVRCVSTVD SACYVRDPQV MDFHAACSEH 300 HLLKAEGLPG GAFMTDQPCF ATDITAFSKT DYPLSHHAKI FGMRAAVAIR VQSIYTKSAD 360 FVLEFFLPLD CTDAEDQKQM LNSIFSALQQ ICHCLHVIAD QKVREETTIP DDEKPSSSVS 420 KSVKEKTLGF VSPAKELSLS TSSWVAPALD NSGTAKDVAF SLDNHQEDPE EECKLTTQWD 480 NNKAELHHTP TSPKLIQIQQ RSGSKGNVVG SEDVSAVGVH NSMGDRSTGQ RRRTKTEKSI 540 SLQDLRQYFS GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LRKLQLVIDS 600 VQCADGAIRL SSFYTNFPEL NSANLPTPSN LSMPQGSDHL QELTTQPEGC ILSPETTASK 660 SPSSSGSHSS SSSFCYSTGP MQSLPVHVPS AQDASSAEEC RAALKKTCSD AELHDLVKRE 720 ETKLLGRSQS QKIFIDDASP DTLPSLPQTS SQILQSGSLF RVKVNFGEEK VRFSLQPRWG 780 FADLLKEVRR RFSIDDLIEI DLKYLDDDNE WVLLTCDADL EECIDIHKSS KSTVIRLSIH 840 QGRHFNVGST SGSHGS

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MDEFGTRHRE NLDAALHSAS SGQPEGFLVE GSDMNRRLWV GPTGDPTPNT SVRKRLVQAI  60
EYLRKSTSDK DALIQLWVPV KRGGGRVLST KNQPFSLDPN CRSLAEYRHI SRNYQFAAEE  120
DSKELVGLPG RVFLKKLPEW TPDVRFFMGE EYPRVNHAQQ YNVRGCLALP VFQRGSGTCL  180
GVVEIVSTAQ KVNYRPELEN VCKALEAVDL SSSIISTSPN MKDCDESYQL ALVDIRSVLK  240
YVCDMNKLPL AQTWASCSRQ GKGGCRHSEE NYVRCVSTVD SACYVRDPQV MDFHAACSEH  300
HLLKAEGLPG GAFMTDQPCF ATDITAFSKT DYPLSHHAKI FGMRAAVAIR VQSIYTKSAD  360
FVLEFFLPLD CTDAEDQKQM LNSIFSALQQ ICHCLHVIAD QKVREETTIP DDEKPSSSVS  420
KSVKEKTLGF VSPAKELSLS TSSWVAPALD NSGTAKDVAF SLDNHQEDPE EECKLTTQWD  480
NNKAELHHTP TSPKLIQIQQ RSGSKGNVVG SEDVSAVGVH NSMGDRSTGQ RRRTKTEKSI  540
SLQDLRQYFS GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LRKLQLVIDS  600
VQCADGAIRL SSFYTNFPEL NSANLPTPSN LSMPQGSDHL QELTTQPEGC ILSPETTASK  660
SPSSSGSHSS SSSFCYSTGP MQSLPVHVPS AQDASSAEEC RAALKKTCSD AELHDLVKRE  720
ETKLLGRSQS QKIFIDDASP DTLPSLPQTS SQILQSGSLF RVKVNFGEEK VRFSLQPRWG  780
FADLLKEVRR RFSIDDLIEI DLKYLDDDNE WVLLTCDADL EECIDIHKSS KSTVIRLSIH  840
QGRHFNVGST SGSHGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein