PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088122.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 925aa MW: 102564 Da PI: 6.1769

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2e-29	606	656	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_027088122.1 606 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 656 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MGDGAFTAND SGTLSDNVLD FDLMDELLFD GFWLESTRES NFWEPDQASI SEEAKTTDFV 60 DHKALDRTQM DEFGTRHREN LDAALHSASS GQPEGFLVEG SDMNRRLWVG PTGDPTPNTS 120 VRKRLVQAIE YLRKSTSDKD ALIQLWVPVK RGGGRVLSTK NQPFSLDPNC RSLAEYRHIS 180 RNYQFAAEED SKELVGLPGR VFLKKLPEWT PDVRFFMGEE YPRVNHAQQY NVRGCLALPV 240 FQRGSGTCLG VVEIVSTAQK VNYRPELENV CKALEAVDLS SSIISTSPNM KDCDESYQLA 300 LVDIRSVLKY VCDMNKLPLA QTWASCSRQG KGGCRHSEEN YVRCVSTVDS ACYVRDPQVM 360 DFHAACSEHH LLKAEGLPGG AFMTDQPCFA TDITAFSKTD YPLSHHAKIF GMRAAVAIRV 420 QSIYTKSADF VLEFFLPLDC TDAEDQKQML NSIFSALQQI CHCLHVIADQ KVREETTIPD 480 DEKPSSSVSK SVKEKTLGFV SPAKELSLST SSWVAPALDN SGTAKDVAFS LDNHQEDPEE 540 ECKLTTQWDN NKAELHHTPT SPKLIQIQQR SGSKGNVVGS EDVSAVGVHN SMGDRSTGQR 600 RRTKTEKSIS LQDLRQYFSG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL 660 RKLQLVIDSV QCADGAIRLS SFYTNFPELN SANLPTPSNL SMPQGSDHLQ ELTTQPEGCI 720 LSPETTASKS PSSSGSHSSS SSFCYSTGPM QSLPVHVPSA QDASSAEECR AALKKTCSDA 780 ELHDLVKREE TKLLGRSQSQ KIFIDDASPD TLPSLPQTSS QILQSGSLFR VKVNFGEEKV 840 RFSLQPRWGF ADLLKEVRRR FSIDDLIEID LKYLDDDNEW VLLTCDADLE ECIDIHKSSK 900 STVIRLSIHQ GRHFNVGSTS GSHGS

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MGDGAFTAND SGTLSDNVLD FDLMDELLFD GFWLESTRES NFWEPDQASI SEEAKTTDFV  60
DHKALDRTQM DEFGTRHREN LDAALHSASS GQPEGFLVEG SDMNRRLWVG PTGDPTPNTS  120
VRKRLVQAIE YLRKSTSDKD ALIQLWVPVK RGGGRVLSTK NQPFSLDPNC RSLAEYRHIS  180
RNYQFAAEED SKELVGLPGR VFLKKLPEWT PDVRFFMGEE YPRVNHAQQY NVRGCLALPV  240
FQRGSGTCLG VVEIVSTAQK VNYRPELENV CKALEAVDLS SSIISTSPNM KDCDESYQLA  300
LVDIRSVLKY VCDMNKLPLA QTWASCSRQG KGGCRHSEEN YVRCVSTVDS ACYVRDPQVM  360
DFHAACSEHH LLKAEGLPGG AFMTDQPCFA TDITAFSKTD YPLSHHAKIF GMRAAVAIRV  420
QSIYTKSADF VLEFFLPLDC TDAEDQKQML NSIFSALQQI CHCLHVIADQ KVREETTIPD  480
DEKPSSSVSK SVKEKTLGFV SPAKELSLST SSWVAPALDN SGTAKDVAFS LDNHQEDPEE  540
ECKLTTQWDN NKAELHHTPT SPKLIQIQQR SGSKGNVVGS EDVSAVGVHN SMGDRSTGQR  600
RRTKTEKSIS LQDLRQYFSG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL  660
RKLQLVIDSV QCADGAIRLS SFYTNFPELN SANLPTPSNL SMPQGSDHLQ ELTTQPEGCI  720
LSPETTASKS PSSSGSHSSS SSFCYSTGPM QSLPVHVPSA QDASSAEECR AALKKTCSDA  780
ELHDLVKREE TKLLGRSQSQ KIFIDDASPD TLPSLPQTSS QILQSGSLFR VKVNFGEEKV  840
RFSLQPRWGF ADLLKEVRRR FSIDDLIEID LKYLDDDNEW VLLTCDADLE ECIDIHKSSK  900
STVIRLSIHQ GRHFNVGSTS GSHGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein